Dear sir,
I am doing tdbse Shg on a system but my collision calc always get stuck at 62% or at 97%, I'm attaching coll input, log and report, please suggest a way so that my calculation can run smoothly, I am stuck in this step for days, i dont feel memory is an issue and it'll run successfully on single core but takes time to complete. Looking fwd to your valuable response.
regards
Sohan
Collisions calculation getting stuck 62% 97%
Moderators: Davide Sangalli, claudio, myrta gruning
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Collisions calculation getting stuck 62% 97%
Last edited by sohan on Mon Mar 17, 2025 8:38 am, edited 1 time in total.
Sohan
M.Sc. (Physics)
Central University of Punjab, India
M.Sc. (Physics)
Central University of Punjab, India
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Re: Collisions calculation getting stuck 62% 97%
Also I have configured and compiled 5.3.0 using
I have attached config log.
regards
sohan
I hope this is not causing the mishap../configure --enable-dp --enable-mpi FC=ifort CC=icc
I have attached config log.
regards
sohan
Last edited by sohan on Mon Mar 17, 2025 8:38 am, edited 1 time in total.
Sohan
M.Sc. (Physics)
Central University of Punjab, India
M.Sc. (Physics)
Central University of Punjab, India
- claudio
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Re: Collisions calculation getting stuck 62% 97%
Dear Sohan
please try to compile yambo_rt without double-precision and use it to calculate collisions,
it is much faster and collisions in single precision are perfect for real-time dynamics.
However do not forget that for the dynamics you need yambo_nl
best
Claudio
please try to compile yambo_rt without double-precision and use it to calculate collisions,
it is much faster and collisions in single precision are perfect for real-time dynamics.
However do not forget that for the dynamics you need yambo_nl
best
Claudio
Claudio Attaccalite
[CNRS/ Aix-Marseille Université/ CINaM laborarory / TSN department
Campus de Luminy – Case 913
13288 MARSEILLE Cedex 09
web site: http://www.attaccalite.com
[CNRS/ Aix-Marseille Université/ CINaM laborarory / TSN department
Campus de Luminy – Case 913
13288 MARSEILLE Cedex 09
web site: http://www.attaccalite.com
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Re: Collisions calculation getting stuck 62% 97%
Dear Sir,
Thank you for the kind response, I'll have two different yambo with single and double precision and will give a try with single precision. Will report you the outcomes.
regards
Sohan
Thank you for the kind response, I'll have two different yambo with single and double precision and will give a try with single precision. Will report you the outcomes.
regards
Sohan
Sohan
M.Sc. (Physics)
Central University of Punjab, India
M.Sc. (Physics)
Central University of Punjab, India
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- Posts: 27
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Re: Collisions calculation getting stuck 62% 97%
Dear sir,
The stuck issue is still there even after configuring with single precision. I have attached again report, input, log and config log. Please suggest any solution.
regards
sohan
The stuck issue is still there even after configuring with single precision. I have attached again report, input, log and config log. Please suggest any solution.
regards
sohan
Last edited by sohan on Mon Mar 17, 2025 8:38 am, edited 1 time in total.
Sohan
M.Sc. (Physics)
Central University of Punjab, India
M.Sc. (Physics)
Central University of Punjab, India
- claudio
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Re: Collisions calculation getting stuck 62% 97%
Dear sohan
try to setup different parallelization scheme and see if it works, just do:
yambo_rt -X s -collisions -potential h+sex -V par
then you can try to parallelize:
RT_CPU= "1,4,1,4" # [PARALLEL] CPUs for each role
RT_ROLEs= "k,b,q,qp" # [PARALLEL] CPUs roles (k,b,q,qp)
or
RT_CPU= "1,1,1,16" # [PARALLEL] CPUs for each role
RT_ROLEs= "k,b,q,qp" # [PARALLEL] CPUs roles (k,b,q,qp)
and check if it works.
Then remember that your parameters are not converged you should increase at least
HARRLvcs= 3000 mHa # [HA] Hartree RL components
EXXRLvcs= 3000 mHa # [XX] Exchange RL components
CORRLvcs= 3000 mHa # [GW] Correlation RL components
and more bands in X.
best
Claudio
try to setup different parallelization scheme and see if it works, just do:
yambo_rt -X s -collisions -potential h+sex -V par
then you can try to parallelize:
RT_CPU= "1,4,1,4" # [PARALLEL] CPUs for each role
RT_ROLEs= "k,b,q,qp" # [PARALLEL] CPUs roles (k,b,q,qp)
or
RT_CPU= "1,1,1,16" # [PARALLEL] CPUs for each role
RT_ROLEs= "k,b,q,qp" # [PARALLEL] CPUs roles (k,b,q,qp)
and check if it works.
Then remember that your parameters are not converged you should increase at least
HARRLvcs= 3000 mHa # [HA] Hartree RL components
EXXRLvcs= 3000 mHa # [XX] Exchange RL components
CORRLvcs= 3000 mHa # [GW] Correlation RL components
and more bands in X.
best
Claudio
Claudio Attaccalite
[CNRS/ Aix-Marseille Université/ CINaM laborarory / TSN department
Campus de Luminy – Case 913
13288 MARSEILLE Cedex 09
web site: http://www.attaccalite.com
[CNRS/ Aix-Marseille Université/ CINaM laborarory / TSN department
Campus de Luminy – Case 913
13288 MARSEILLE Cedex 09
web site: http://www.attaccalite.com
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- Posts: 27
- Joined: Thu Nov 14, 2024 1:10 pm
Re: Collisions calculation getting stuck 62% 97%
Dear sir,
There's one thing I noticed while running collisions calculation in parallel, that it will stuck for particular no. of processors and will run for one certain number of processors. In my case I was able to run collision calculation
What could be the reason behind it?
regards
sohan
There's one thing I noticed while running collisions calculation in parallel, that it will stuck for particular no. of processors and will run for one certain number of processors. In my case I was able to run collision calculation
when N= 1,2,3,5,11,19 and was getting stuck when N= 4,8,7,16,12mpirun -np N yambo_rt
What could be the reason behind it?
regards
sohan
Sohan
M.Sc. (Physics)
Central University of Punjab, India
M.Sc. (Physics)
Central University of Punjab, India
- Davide Sangalli
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Re: Collisions calculation getting stuck 62% 97%
It is an issue which was also noticed in the past and never solved so far.
At present we do not have a solution. We are checking the code in order to fix it.
Best,
D.
At present we do not have a solution. We are checking the code in order to fix it.
Best,
D.
Davide Sangalli, PhD
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/