NaN in quasiparticle energies calculation with yambo-5.1.2
Moderators: Davide Sangalli, andrea.ferretti, myrta gruning, andrea marini, Daniele Varsano
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NaN in quasiparticle energies calculation with yambo-5.1.2
Dear developers,
I'm following the tutorial to obtain the quasi-particle band structure with yambo-5.1.2. There are on errors presented in my log files, but the values of (E-Eo) and Sc(Eo) are NaN when I set "DysSolver" to "n" or "s".
The HF quasi-particle correction calculations are normal. But X_Q_1 in ndb.pp_fragment_1 file are all "NaN".
I attached my input and report files. How can I fix it?
Thanks for your generous help!
Best,
Siyuan
I'm following the tutorial to obtain the quasi-particle band structure with yambo-5.1.2. There are on errors presented in my log files, but the values of (E-Eo) and Sc(Eo) are NaN when I set "DysSolver" to "n" or "s".
The HF quasi-particle correction calculations are normal. But X_Q_1 in ndb.pp_fragment_1 file are all "NaN".
I attached my input and report files. How can I fix it?
Thanks for your generous help!
Best,
Siyuan
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Gao Siyuan
XMU, Xiamen, China
XMU, Xiamen, China
- Daniele Varsano
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Re: NaN in quasiparticle energies calculation with yambo-5.1.2
Dear Gao,
we will try to reproduce your problem, I suspect that there could be something related to the compilation, can you post also your config.log?
Best,
Daniele
we will try to reproduce your problem, I suspect that there could be something related to the compilation, can you post also your config.log?
Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
- Davide Sangalli
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Re: NaN in quasiparticle energies calculation with yambo-5.1.2
Dear Siyuan,
what about the ndb.dipoles. Does it contain NaNs as well?
Best,
D.
what about the ndb.dipoles. Does it contain NaNs as well?
Best,
D.
Davide Sangalli, PhD
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/
- Daniele Varsano
- Posts: 4198
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Re: NaN in quasiparticle energies calculation with yambo-5.1.2
Dear Gao,
Can you download the new release (5.2) and see if the problem persists.
Best,
Daniele
Can you download the new release (5.2) and see if the problem persists.
Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
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- Joined: Tue Aug 29, 2023 3:32 pm
Re: NaN in quasiparticle energies calculation with yambo-5.1.2
Dear Daniele,Daniele Varsano wrote: ↑Thu Sep 07, 2023 5:11 pm Dear Gao,
we will try to reproduce your problem, I suspect that there could be something related to the compilation, can you post also your config.log?
Best,
Daniele
Thanks for reply, here's config.log. And I'll try v5.2.
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Gao Siyuan
XMU, Xiamen, China
XMU, Xiamen, China
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- Posts: 4
- Joined: Tue Aug 29, 2023 3:32 pm
Re: NaN in quasiparticle energies calculation with yambo-5.1.2
Dear DavideDavide Sangalli wrote: ↑Fri Sep 08, 2023 9:39 am Dear Siyuan,
what about the ndb.dipoles. Does it contain NaNs as well?
Best,
D.
Thanks for your reply. The ndb.dipoles does contained several NaNs.
Gao Siyuan
XMU, Xiamen, China
XMU, Xiamen, China
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- Posts: 4
- Joined: Tue Aug 29, 2023 3:32 pm
Re: NaN in quasiparticle energies calculation with yambo-5.1.2
I‘ve run a tutorial hBN again using Yambo5.2.0, but it still cause NaN.
Gao Siyuan
XMU, Xiamen, China
XMU, Xiamen, China
- Davide Sangalli
- Posts: 640
- Joined: Tue May 29, 2012 4:49 pm
- Location: Via Salaria Km 29.3, CP 10, 00016, Monterotondo Stazione, Italy
- Contact:
Re: NaN in quasiparticle energies calculation with yambo-5.1.2
So the issue is surely there.The ndb.dipoles does contained several NaNs.
The operation done to generate the dipoles are simple linear algebra operations.
When NaNs are there, usually it is due to a problem with the linking of blas/lapack libraries.
Can you try to recompile yambo using the flag
Code: Select all
--enable-int-linalg
It will download and compile the blas and lapack library together with the code.
Best,
D.
Davide Sangalli, PhD
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/