an error during initialization
Moderators: Davide Sangalli, andrea.ferretti, myrta gruning, Daniele Varsano
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- Posts: 19
- Joined: Sun Dec 03, 2017 10:24 am
- Location: Algeria
an error during initialization
dear all
after typing the following commands in the "prefix.save" folder,
> ~ /../ bin / P2Y
../bin/yambo -D
../bin/yambo -i -V RL
../bin/yambo
I encountered an error during initialization, you find it in the attached file
zaabar foudil
university of bejaia
algeria
after typing the following commands in the "prefix.save" folder,
> ~ /../ bin / P2Y
../bin/yambo -D
../bin/yambo -i -V RL
../bin/yambo
I encountered an error during initialization, you find it in the attached file
zaabar foudil
university of bejaia
algeria
You do not have the required permissions to view the files attached to this post.
- Daniele Varsano
- Posts: 4209
- Joined: Tue Mar 17, 2009 2:23 pm
- Contact:
Re: an error during initialization
Dear Zaabar,
in order to spot the problem we need to reproduce your error.
Can you post your QE input files?
Best,
Daniele
in order to spot the problem we need to reproduce your error.
Can you post your QE input files?
Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
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- Posts: 19
- Joined: Sun Dec 03, 2017 10:24 am
- Location: Algeria
Re: an error during initialization
Dear Daniele Varsano
thank you for your quick answer,
you will find in the attached file the input and output files
best regards
thank you for your quick answer,
you will find in the attached file the input and output files
best regards
You do not have the required permissions to view the files attached to this post.
- Daniele Varsano
- Posts: 4209
- Joined: Tue Mar 17, 2009 2:23 pm
- Contact:
Re: an error during initialization
DearZabaar,
We will try to reproduce your error,
I assume you are using the last release of the code.
Best,
Daniele
PS: you can sign your post once for all by filling the signature field in your user profile.
We will try to reproduce your error,
I assume you are using the last release of the code.
Best,
Daniele
PS: you can sign your post once for all by filling the signature field in your user profile.
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
-
- Posts: 19
- Joined: Sun Dec 03, 2017 10:24 am
- Location: Algeria
Re: an error during initialization
Dear Daniele Varsano
thanks for you help,I found the same error with the following three versions:
yambo-4.1.2
yambo-4.1.3
yambo-4.1.5
I configured them using the following command line: ./configure FC = ifort PFC = mpif90 --enable-open-mp --with-iotk-libdir = / local / funsilab / karim / espresso-5.2.0 / iotk / src --with-iotk-includedir = / local / funsilab / karim /espresso-5.2.0 / iotk / src
best regards
foudil zaabar
university of bejaia
algeria
thanks for you help,I found the same error with the following three versions:
yambo-4.1.2
yambo-4.1.3
yambo-4.1.5
I configured them using the following command line: ./configure FC = ifort PFC = mpif90 --enable-open-mp --with-iotk-libdir = / local / funsilab / karim / espresso-5.2.0 / iotk / src --with-iotk-includedir = / local / funsilab / karim /espresso-5.2.0 / iotk / src
best regards
foudil zaabar
university of bejaia
algeria
- Daniele Varsano
- Posts: 4209
- Joined: Tue Mar 17, 2009 2:23 pm
- Contact:
Re: an error during initialization
Dear Foudil,
I have just made a try with your input file using the last yambo version ( GPL Version 4.3.0 Revision 129.) and I could not find any problem in doing the setup.
I strongly suggest you to update to a new release of the code also because older version as such you are using are not supported anymore.
Best,
Daniele
I have just made a try with your input file using the last yambo version ( GPL Version 4.3.0 Revision 129.) and I could not find any problem in doing the setup.
I strongly suggest you to update to a new release of the code also because older version as such you are using are not supported anymore.
Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
-
- Posts: 19
- Joined: Sun Dec 03, 2017 10:24 am
- Location: Algeria
Re: an error during initialization
Dear Daniele Varsano
I performed the previous calculations (date.save) on my computer, they work well, during the installation of yambo code within our cluster, using the following command line:
./configure FC = ifort PFC = mpif90 --enable-open-mp --with-iotk-libdir = / local / funsilab / karim / qe-6.3 / iotk / src --with-iotk-includedir = / local / funsilab /karim/qe-6.3/iotk/src --enable-netcdf-LFS
I encountered the following problem:
usr / local / intel / composer_xe_2011_sp1.9.293 / compiler / lib / intel64 / libimf.so: warning: warning: firewall is not implemented and will always fail
after a search in intel forum, I concluded that I must link between the two math libraries of the intel "libimf " and that of the system "libm".
my question is how to link between them!
best regards
zaabar foudil
university of bejaia
algeria
I performed the previous calculations (date.save) on my computer, they work well, during the installation of yambo code within our cluster, using the following command line:
./configure FC = ifort PFC = mpif90 --enable-open-mp --with-iotk-libdir = / local / funsilab / karim / qe-6.3 / iotk / src --with-iotk-includedir = / local / funsilab /karim/qe-6.3/iotk/src --enable-netcdf-LFS
I encountered the following problem:
usr / local / intel / composer_xe_2011_sp1.9.293 / compiler / lib / intel64 / libimf.so: warning: warning: firewall is not implemented and will always fail
after a search in intel forum, I concluded that I must link between the two math libraries of the intel "libimf " and that of the system "libm".
my question is how to link between them!
best regards
zaabar foudil
university of bejaia
algeria
- Daniele Varsano
- Posts: 4209
- Joined: Tue Mar 17, 2009 2:23 pm
- Contact:
Re: an error during initialization
Dear zaabar,
unfortunately, I cannot help you much with that, this is a problem of the configuration of your compilers and not of yambo.
Anyway, this is a warning, does it prevent your compilation?
Maybe you can have a look at this thread:
https://software.intel.com/en-us/forums ... pic/267925
They suggest adding the flag -i_dynamic (you can try FCFLAGS=-i_dynamic) or you can try linking mkl libraries:
MKL_PATH="$path/mkl/lib/intel64"
--with-blas-libs="-L$MKL_PATH -lmkl_core -lmkl_intel_lp64 -lmkl_sequential" \
--with-lapack-libs="-L$MKL_PATH -lmkl_core -lmkl_intel_lp64 -lmkl_sequential" \
Best,
Daniele
unfortunately, I cannot help you much with that, this is a problem of the configuration of your compilers and not of yambo.
Anyway, this is a warning, does it prevent your compilation?
Maybe you can have a look at this thread:
https://software.intel.com/en-us/forums ... pic/267925
They suggest adding the flag -i_dynamic (you can try FCFLAGS=-i_dynamic) or you can try linking mkl libraries:
MKL_PATH="$path/mkl/lib/intel64"
--with-blas-libs="-L$MKL_PATH -lmkl_core -lmkl_intel_lp64 -lmkl_sequential" \
--with-lapack-libs="-L$MKL_PATH -lmkl_core -lmkl_intel_lp64 -lmkl_sequential" \
Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/