Suspending during BSE calculations.

You can find here problems arising when using old releases of Yambo (< 5.0). Issues as parallelization strategy, performance issues and other technical aspects.

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plasmon
Posts: 39
Joined: Thu Aug 23, 2018 9:18 am
Location: Fudan University, Shanghai, China
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Suspending during BSE calculations.

Post by plasmon » Sat Apr 10, 2021 1:27 pm

Dear Developers,

Recently I used yambo to calculate the optical properties of two-dimensional materials, but it suspent during BSE calculations. I have attached the in and output files here. Could you please help me fix this problem?

Thank you very much!

With best regards,
Hao Zhang
You do not have the required permissions to view the files attached to this post.
Dr. Hao Zhang
Department of Optical Science and Engineering, Fudan University,Shanghai 200433, China
http://homepage.fudan.edu.cn/zhanghao/

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Daniele Varsano
Posts: 4231
Joined: Tue Mar 17, 2009 2:23 pm
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Re: Suspending during BSE calculations.

Post by Daniele Varsano » Sun Apr 11, 2021 2:38 pm

Dear Hao,
do the run stop when building the BSE kernel or while diagonalising?
do you have any error message? please have a look to the log files.

Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/

plasmon
Posts: 39
Joined: Thu Aug 23, 2018 9:18 am
Location: Fudan University, Shanghai, China
Contact:

Re: Suspending during BSE calculations.

Post by plasmon » Mon Apr 12, 2021 4:20 am

The run stops when building the BSE kernel. I have attached the log files here. Thank you very much!

With best regards,
Hao
Daniele Varsano wrote: Sun Apr 11, 2021 2:38 pm Dear Hao,
do the run stop when building the BSE kernel or while diagonalising?
do you have any error message? please have a look to the log files.

Best,
Daniele
You do not have the required permissions to view the files attached to this post.
Dr. Hao Zhang
Department of Optical Science and Engineering, Fudan University,Shanghai 200433, China
http://homepage.fudan.edu.cn/zhanghao/

User avatar
Daniele Varsano
Posts: 4231
Joined: Tue Mar 17, 2009 2:23 pm
Contact:

Re: Suspending during BSE calculations.

Post by Daniele Varsano » Mon Apr 12, 2021 8:49 am

Dear Hao,
it would be useful if you send the log files, ie the files contained in the LOG directory, in the last post you attached input and report, the same of the ones you already posted.

Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/

plasmon
Posts: 39
Joined: Thu Aug 23, 2018 9:18 am
Location: Fudan University, Shanghai, China
Contact:

Re: Suspending during BSE calculations.

Post by plasmon » Mon Apr 12, 2021 10:23 am

Dear Varsano,

Sorry for the mistake. I have attached the LOG files here. Thank you!

With best regards,
Hao
Daniele Varsano wrote: Mon Apr 12, 2021 8:49 am Dear Hao,
it would be useful if you send the log files, ie the files contained in the LOG directory, in the last post you attached input and report, the same of the ones you already posted.

Best,
Daniele
You do not have the required permissions to view the files attached to this post.
Dr. Hao Zhang
Department of Optical Science and Engineering, Fudan University,Shanghai 200433, China
http://homepage.fudan.edu.cn/zhanghao/

User avatar
Daniele Varsano
Posts: 4231
Joined: Tue Mar 17, 2009 2:23 pm
Contact:

Re: Suspending during BSE calculations.

Post by Daniele Varsano » Mon Apr 12, 2021 10:54 am

Dear Hao,
it seems that the building of the kernel do not start,
as you can see from the log file number 4:

Code: Select all

P4: [ERROR] STOP signal received while in :[08.03.02] Wave-Function Phases
P4: [ERROR]EMPTY WF index @ b:41 k:1 spin:1 ID:3
the calculation stops as yambo is looking for bands 41 which is not included in your input file.
Yambo wants to include bands number 41 as after GW correction the system has the following electronic configuration:

Code: Select all

[K]States summary         : Full        Metallic    Empty
                                 0001-0034   0035-0041   0042-0100
  [K]N of el / N of met el  :  72.00000   3.89808
that you can read from the GW report.

In order to build the BSE kernel you need at least one empty bands, so you should include bands at least u to bands 42 in your input file.

Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/

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