Visualizing Molecular Orbitals obtained from COHSEX
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Visualizing Molecular Orbitals obtained from COHSEX
Dear all,
I'm just wondering if there is any way to visualize molecular orbitals corrected by COHSEX calculations?
Thanks in advance.
Best,
Reza
I'm just wondering if there is any way to visualize molecular orbitals corrected by COHSEX calculations?
Thanks in advance.
Best,
Reza
Reza Vatan Meidanshahi
Electrical Engineering Department
Arizona State University
USA
Electrical Engineering Department
Arizona State University
USA
- Daniele Varsano
- Posts: 4198
- Joined: Tue Mar 17, 2009 2:23 pm
- Contact:
Re: Visualizing Molecular Orbitals obtained from COHSEX
Dear Reza,
in the GPL release COHSEX calculation it is not implemented self consistently.
This means that COHSEC correction applies to the energies but not to the wave functions (molecular orbitals), which implies the assumptions that COHSEX orbitals are the same of KS orbitals.
We have implemented Self consistent COHSEX, but it is not yet released under GPL, and hopefully it will be done soon.
Best,
Daniele
in the GPL release COHSEX calculation it is not implemented self consistently.
This means that COHSEC correction applies to the energies but not to the wave functions (molecular orbitals), which implies the assumptions that COHSEX orbitals are the same of KS orbitals.
We have implemented Self consistent COHSEX, but it is not yet released under GPL, and hopefully it will be done soon.
Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
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- Posts: 18
- Joined: Thu Mar 26, 2015 5:33 am
Re: Visualizing Molecular Orbitals obtained from COHSEX
Dear Daneile,
Thank you so much for your reply. The reason that I want to visualize my molecular orbitals is determining their localization. I saw in the literature that people use a factor named inverse participation ratio (IPR) to determine the localization without visualizing the molecular orbitals. I want to have that factor for the energy states in my dos plot (attached file) especially close to the band gap. The definition of that factor is very straight forward and has been brought in the attached paper page 2, right column, sixth line. Do you think if there is any way to extract the required information for calculating IPR from COHSEX calculation?
Like always thank you so much for your help and comments.
Best,
Reza
Thank you so much for your reply. The reason that I want to visualize my molecular orbitals is determining their localization. I saw in the literature that people use a factor named inverse participation ratio (IPR) to determine the localization without visualizing the molecular orbitals. I want to have that factor for the energy states in my dos plot (attached file) especially close to the band gap. The definition of that factor is very straight forward and has been brought in the attached paper page 2, right column, sixth line. Do you think if there is any way to extract the required information for calculating IPR from COHSEX calculation?
Like always thank you so much for your help and comments.
Best,
Reza
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Reza Vatan Meidanshahi
Electrical Engineering Department
Arizona State University
USA
Electrical Engineering Department
Arizona State University
USA
- Daniele Varsano
- Posts: 4198
- Joined: Tue Mar 17, 2009 2:23 pm
- Contact:
Re: Visualizing Molecular Orbitals obtained from COHSEX
Dear Reza,
unfortunately I could not find the attached paper. If you want you can just post the reference.
Best
Daniele
unfortunately I could not find the attached paper. If you want you can just post the reference.
Best
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
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- Posts: 18
- Joined: Thu Mar 26, 2015 5:33 am
Re: Visualizing Molecular Orbitals obtained from COHSEX
Dear Daneile,
Here is the reference:
Best,
Reza
Here is the reference:
Many thanks for your help.Dong, Jianjun, and D. A. Drabold. "Atomistic structure of band-tail states in amorphous silicon." Physical review letters 80.9 (1998): 1928.
Best,
Reza
Reza Vatan Meidanshahi
Electrical Engineering Department
Arizona State University
USA
Electrical Engineering Department
Arizona State University
USA
- Daniele Varsano
- Posts: 4198
- Joined: Tue Mar 17, 2009 2:23 pm
- Contact:
Re: Visualizing Molecular Orbitals obtained from COHSEX
Dear Reza,
the IPR factor looks me something related to the tight binding description of the Hamiltonian. Yambo relies on plane waves (as computed by quantum espresso) so it is not clear to me how to translate this IPR concept in plane wave basis set. Anyway as non self-consistent cohsex does not change the wave functions and they are exactly the same as computed by espresso, you can have a look tot he qe mailing list if something similar has been discussed.
Best,
Daniele
the IPR factor looks me something related to the tight binding description of the Hamiltonian. Yambo relies on plane waves (as computed by quantum espresso) so it is not clear to me how to translate this IPR concept in plane wave basis set. Anyway as non self-consistent cohsex does not change the wave functions and they are exactly the same as computed by espresso, you can have a look tot he qe mailing list if something similar has been discussed.
Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
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- Posts: 18
- Joined: Thu Mar 26, 2015 5:33 am
Re: Visualizing Molecular Orbitals obtained from COHSEX
Dear Daniel,
Thank you for your comment. It was helpful.
Best,
Reza
Thank you for your comment. It was helpful.
Best,
Reza
Reza Vatan Meidanshahi
Electrical Engineering Department
Arizona State University
USA
Electrical Engineering Department
Arizona State University
USA
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- Posts: 10
- Joined: Mon Nov 18, 2019 11:44 am
Re: Visualizing Molecular Orbitals obtained from COHSEX
Dear Dr. Daniele Sangalli,
Is the self-consistent COHSEX available in Yambo now?
Regards,
Kshirsagar Aseem Rajan,
PhD Student, CNRS,
Laboratoire de Science et Ingénierie des Matériaux et Procédés (SIMaP),
Grenoble-INP, Univ. of Grenoble-Alpes (UGA),
France-38042
Is the self-consistent COHSEX available in Yambo now?
Regards,
Kshirsagar Aseem Rajan,
PhD Student, CNRS,
Laboratoire de Science et Ingénierie des Matériaux et Procédés (SIMaP),
Grenoble-INP, Univ. of Grenoble-Alpes (UGA),
France-38042
Aseem Rajan Kshirsagar,
Postdoctoral researcher,
Department of Physics and Material Science,
University of Luxembourg (Limpertsberg campus)
Postdoctoral researcher,
Department of Physics and Material Science,
University of Luxembourg (Limpertsberg campus)
- Daniele Varsano
- Posts: 4198
- Joined: Tue Mar 17, 2009 2:23 pm
- Contact:
Re: Visualizing Molecular Orbitals obtained from COHSEX
Dear Kshirsagar Aseem Rajan,
unfortunately, the self-consistency on wave functions is not yet released. We really hope to release soon together with many other features.
Best,
Daniele
unfortunately, the self-consistency on wave functions is not yet released. We really hope to release soon together with many other features.
Best,
Daniele
Dr. Daniele Varsano
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
S3-CNR Institute of Nanoscience and MaX Center, Italy
MaX - Materials design at the Exascale
http://www.nano.cnr.it
http://www.max-centre.eu/
-
- Posts: 10
- Joined: Mon Nov 18, 2019 11:44 am
Re: Visualizing Molecular Orbitals obtained from COHSEX
Okay. That would be very helpful. Thanks!
Regards,
aseem
Regards,
aseem
Aseem Rajan Kshirsagar,
Postdoctoral researcher,
Department of Physics and Material Science,
University of Luxembourg (Limpertsberg campus)
Postdoctoral researcher,
Department of Physics and Material Science,
University of Luxembourg (Limpertsberg campus)