Compiling error

Having trouble compiling the Yambo source? Using an unusual architecture? Problems with the "configure" script? Problems in GPU architectures? This is the place to look.

Moderators: Davide Sangalli, andrea.ferretti, myrta gruning, andrea marini, Daniele Varsano, Conor Hogan, Nicola Spallanzani

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If you have trouble compiling Yambo, please make sure to list:
(1) the compiler (vendor and release: e.g. intel 10.1)
(2) the architecture (e.g. 64-bit IBM SP5)
(3) if the problems occur compiling in serial/in parallel
(4) the version of Yambo (revision number/major release version)
(5) the relevant compiler error message
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henry
Posts: 4
Joined: Wed Jan 06, 2016 12:00 pm

Compiling error

Post by henry » Wed Jan 06, 2016 7:09 pm

Intel(R) Celeron(R) CPU N2840 @ 2.16 GHz
64-bit Operating System, x64-based processor
Compiling in serial
yambo-4.0.2-rev.90

Hello sir,

I am trying to install yambo on fedora desktop operating system. The configure script runs well. However, compilation does not go to completion. Instead, I get the following error message in the last few lines:

checking how to run the C++ preprocessor... /lib/cpp
configure: error: in `/home/henryodhiambo/Applications/yambo-4.0.2-rev.90/lib/netcdf/netcdf-y4.1.3':
configure: error: C++ preprocessor "/lib/cpp" fails sanity check
See `config.log' for more details
Makefile:35: recipe for target 'configure-stamp' failed
make[1]: *** [configure-stamp] Error 1
make[1]: Leaving directory '/home/henryodhiambo/Applications/yambo-4.0.2-rev.90/lib/netcdf'
Makefile:89: recipe for target 'libs' failed
make: *** [libs] Error 2

What could be the problem? Thank you.

Regards,
Henry Odhiambo
Department of Physics and Materials Science
Maseno University
Kenya

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myrta gruning
Posts: 242
Joined: Tue Mar 17, 2009 11:38 am
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Re: Compiling error

Post by myrta gruning » Thu Jan 07, 2016 8:59 am

Dear Henry

From what you posted the problem seems in the configure.
Can you upload the config.log so that we can see more precisely what is the problem?

Best,
Myrta
Dr Myrta Grüning
School of Mathematics and Physics
Queen's University Belfast - Northern Ireland

http://www.researcherid.com/rid/B-1515-2009

henry
Posts: 4
Joined: Wed Jan 06, 2016 12:00 pm

Re: Compiling error

Post by henry » Thu Jan 07, 2016 10:11 am

Dear Myrta,

Attached is the config.log file

I hope to hear from you. Thank you.

Henry Odhiambo
Department of Physics and Materials Science
Maseno University
Kenya
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myrta gruning
Posts: 242
Joined: Tue Mar 17, 2009 11:38 am
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Re: Compiling error

Post by myrta gruning » Fri Jan 08, 2016 9:15 am

dear Henry

The configure process of Yambo was indeed successful. The configure that failed is probably that of the extra libraries needed by Yambo, possibly NETCDF.
For what I can see it seems related to missing C++ compiler. You can try to install it (using e.g. yum) and then try to compile yambo again.

Hope this helps,
Myrta
Dr Myrta Grüning
School of Mathematics and Physics
Queen's University Belfast - Northern Ireland

http://www.researcherid.com/rid/B-1515-2009

henry
Posts: 4
Joined: Wed Jan 06, 2016 12:00 pm

Re: Compiling error

Post by henry » Sat Jan 09, 2016 9:53 am

Hello,

yum install gcc-c++

It worked. Thank you.

Henry Odhiambo
Dept of Physics and Materials science
Maseno University
Kenya

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