Yambo 5 compilation error

[pyadav]

Dear Nicola,

Thank you for your response.

Please find the attached zip file, it contains the config/report file and the last file written in the log/ directory.

yambo_5.1_error.zip

Wishes,
Pushpendra

[Nicola Spallanzani]

Dear Pushpendra,
this time I think that the issue is related to the old version of the hdf5 library used.
Try to let yambo to download and compile the library by itself. If you have not provided the library so try applying this patch:

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patch -u configure -i hdf5_v51_patch.txt

Best,
Nicola

[pyadav]

Dear Nicola,

Yes, last time I gave the path to pre installed hdf5. This time I did the configure without assigning it. After successful configure, when I 'make all' I receive the following error message-

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make[2]: *** [variables_BS.o] Error 1
variables_BS.f90(26): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [NETCDF]
	[interfaces/int_modules] int_modules (checking work to be done)
	[interfaces/int_modules] libint_modules.a (lib)
	[interfaces/p2y] p2y (checking work to be done)
p2y linking failed. Check log/compile_p2y.log
variables_BS.f90(26): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [NETCDF]
make[1]: *** [p2y] Error 1
p2y build failed

Here I also attach the log files in the attached zip file.

yambo_5.1.error2.zip

Thanking you,

Pushpendra

[pyadav]

Dear team yambo,

Can someone please help me with the above issue?

Thank you,
Pushpendra

[Daniele Varsano]

Dera Pushendra,

did you make a make clean (all, distclean) before starting the procedure again?
If you already did that, hopefully Nicola can provide you more info.
Best,
Daniele

[Nicola Spallanzani]

Dear Pushpendra,
as said by Daniele you have to delete the previous compilation of the netcdf library. To do that you have to launch the command
make distclean
then run again the configure command.

About it, I see in the file config.log that there is a problem on how it is launched the configure command:

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$ ./configure CC=icc PFC=mpiifort FC=ifort MPIFC=mpiifort MPIF77=ifort MPICC=mpiicc F77=ifort --enable-dp F90=ifort --with-blas-libs=-Wl,--start-group /libmkl_intel_lp64.a /libmkl_sequential.a /libmkl_core.a -Wl,--end-group --with-lapack-libs=-Wl,--start-group /libmkl_intel_lp64.a /libmkl_sequential.a /libmkl_core.a -Wl,--end-group --with-blacs-libs=/libmkl_blacs_intelmpi_lp64.a --with-scalapack-libs=/libmkl_scalapack_lp64.a --with-fft-libs=-L/lib -lfftw3 --with-fft-path=

clearly some paths are missing in this line: maybe you are using some environment variables that are not defined.

Could you send me also the configure line that you are using?
Where are the mkl library installed?
Is the environment variable MKLROOT defined?
Where are the fftw libraries installed?

Best,
Nicola

[pyadav]

Dear Nicola,

I followed the 'make distclean' and started the installation fresh. This time I did not give any path while doing './configure'. It ended with the Yambo build failed.

The log files are attached herewith.

yambo_5.1.error3.zip

Thank you,
Pushpendra

[Nicola Spallanzani]

Dear Pushpendra,
try simply with this command:

Code: Select all

make distclean
./configure CC=icc FC=ifort MPIFC=mpiifort MPIF77=ifort MPICC=mpiicc F77=ifort \
        --enable-mpi --enable-open-mp \
        --enable-msgs-comps \
        --enable-time-profile \
        --enable-memory-profile

Best,
Nicola

PS: if you continue to have problems send me also the config/report file.