Dear all,
I am getting segmentation fault for p2y within freshly compiled yambo 3.4.1 r.3187 and QE 5.1.1. The p2y crashes on QE 5.1.1 outputs but works fine on QE 5.0.2. Here is the message as well as I am attaching PP and data-file.xml. Any hints are very welcome.
Best regards.
<---> P(W) 2 Y(ambo) Ver. 5.0
<---> DBs path set to .
<---> Index file set to data-file.xml
<---> Header/K-points/Energies...done
<---> Cell data...done
<---> Atomic data...done
<---> Symmetries...[SI no]......[-I no]...[TR yes][pc1011203510:21498] *** Process received signal ***
[pc1011203510:21498] Signal: Segmentation fault (11)
[pc1011203510:21498] Signal code: Address not mapped (1)
[pc1011203510:21498] Failing at address: 0x8
[pc1011203510:21498] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xf0a0) [0x2b059f5140a0]
[pc1011203510:21498] [ 1] /temp_local/CODES/espresso/espresso-5.1.1/YAMBO/bin/p2y(xc_f90_info_name_+0x7) [0x556017]
[pc1011203510:21498] [ 2] /temp_local/CODES/espresso/espresso-5.1.1/YAMBO/bin/p2y(__xc_functionals_MOD_xc_setup_fnctl+0xbd) [0x48a90d]
[pc1011203510:21498] [ 3] /temp_local/CODES/espresso/espresso-5.1.1/YAMBO/bin/p2y(__xc_functionals_MOD_xc_string+0x80) [0x48aa70]
[pc1011203510:21498] [ 4] /temp_local/CODES/espresso/espresso-5.1.1/YAMBO/bin/p2y(p2y_db1_+0x19e) [0x4446de]
[pc1011203510:21498] [ 5] /temp_local/CODES/espresso/espresso-5.1.1/YAMBO/bin/p2y(p2y_i_+0x4c5) [0x445c75]
[pc1011203510:21498] [ 6] /temp_local/CODES/espresso/espresso-5.1.1/YAMBO/bin/p2y(main+0x7f0) [0x41d270]
[pc1011203510:21498] [ 7] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xfd) [0x2b059f740ead]
[pc1011203510:21498] [ 8] /temp_local/CODES/espresso/espresso-5.1.1/YAMBO/bin/p2y() [0x41d62d]
[pc1011203510:21498] *** End of error message ***
Segmentation fault
p2y segmentation fault :: yambo 3.4.1 r.3187 + QE 5.1.1
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p2y segmentation fault :: yambo 3.4.1 r.3187 + QE 5.1.1
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Martin Gmitra, PhD
University of Regensburg, Germany
University of Regensburg, Germany
- myrta gruning
- Posts: 240
- Joined: Tue Mar 17, 2009 11:38 am
- Contact:
Re: p2y segmentation fault :: yambo 3.4.1 r.3187 + QE 5.1.1
Dear Martin
thank you very much for reporting the problem.
Indeed I tried p2y on a calculation with QE5.1.1. with the same problem.
Using the 5.0.1 with the same input and yambo versions worked fine.
We will look closely at the matter and let you know.
Best
m
thank you very much for reporting the problem.
Indeed I tried p2y on a calculation with QE5.1.1. with the same problem.
Using the 5.0.1 with the same input and yambo versions worked fine.
We will look closely at the matter and let you know.
Best
m
Dr Myrta Grüning
School of Mathematics and Physics
Queen's University Belfast - Northern Ireland
http://www.researcherid.com/rid/B-1515-2009
School of Mathematics and Physics
Queen's University Belfast - Northern Ireland
http://www.researcherid.com/rid/B-1515-2009
- Davide Sangalli
- Posts: 614
- Joined: Tue May 29, 2012 4:49 pm
- Location: Via Salaria Km 29.3, CP 10, 00016, Monterotondo Stazione, Italy
- Contact:
Re: p2y segmentation fault :: yambo 3.4.1 r.3187 + QE 5.1.1
Dear Martin,
the issue should now be fixed both in the svn repository and in the last version you can download.
Best,
Davide
the issue should now be fixed both in the svn repository and in the last version you can download.
Best,
Davide
Davide Sangalli, PhD
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/
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p2y segmentation fault :: yambo svn rev.70 + QE 5.1.2
Dear YAMBO developers,
The same segmentation fault occured for p2y in yambo svn rev.70 and QE 5.1.2:
<---> P(W) 2 Y(ambo) Ver. 5.0
<---> DBs path set to .
<---> Index file set to data-file.xml
<---> Header/K-points/Energies...done
<---> Cell data...done
<---> Atomic data...done
<---> Symmetries...[SI no]......[-I no]...[TR yes][client186-150:02874] *** Process received signal ***
[client186-150:02874] Signal: Segmentation fault (11)
[client186-150:02874] Signal code: Address not mapped (1)
[client186-150:02874] Failing at address: 0x8
[client186-150:02874] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) [0x7f88e00d1cb0]
[client186-150:02874] [ 1] /opt/yambo-svn/bin/p2y() [0x62b68d]
[client186-150:02874] [ 2] /opt/yambo-svn/bin/p2y() [0x4a0ac6]
[client186-150:02874] [ 3] /opt/yambo-svn/bin/p2y() [0x444ef3]
[client186-150:02874] [ 4] /opt/yambo-svn/bin/p2y() [0x44637d]
[client186-150:02874] [ 5] /opt/yambo-svn/bin/p2y() [0x40ab84]
[client186-150:02874] [ 6] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f88db94e76d]
[client186-150:02874] [ 7] /opt/yambo-svn/bin/p2y() [0x409d89]
[client186-150:02874] *** End of error message ***
The same segmentation fault occured for p2y in yambo svn rev.70 and QE 5.1.2:
<---> P(W) 2 Y(ambo) Ver. 5.0
<---> DBs path set to .
<---> Index file set to data-file.xml
<---> Header/K-points/Energies...done
<---> Cell data...done
<---> Atomic data...done
<---> Symmetries...[SI no]......[-I no]...[TR yes][client186-150:02874] *** Process received signal ***
[client186-150:02874] Signal: Segmentation fault (11)
[client186-150:02874] Signal code: Address not mapped (1)
[client186-150:02874] Failing at address: 0x8
[client186-150:02874] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0) [0x7f88e00d1cb0]
[client186-150:02874] [ 1] /opt/yambo-svn/bin/p2y() [0x62b68d]
[client186-150:02874] [ 2] /opt/yambo-svn/bin/p2y() [0x4a0ac6]
[client186-150:02874] [ 3] /opt/yambo-svn/bin/p2y() [0x444ef3]
[client186-150:02874] [ 4] /opt/yambo-svn/bin/p2y() [0x44637d]
[client186-150:02874] [ 5] /opt/yambo-svn/bin/p2y() [0x40ab84]
[client186-150:02874] [ 6] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f88db94e76d]
[client186-150:02874] [ 7] /opt/yambo-svn/bin/p2y() [0x409d89]
[client186-150:02874] *** End of error message ***
Last edited by vence on Thu Apr 09, 2015 9:34 pm, edited 1 time in total.
Dr. Vyacheslav Sokolov
Fiber Optics Research Center, Russian Academy of Sciences
Moscow, Russia
Fiber Optics Research Center, Russian Academy of Sciences
Moscow, Russia
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- Posts: 4
- Joined: Thu Nov 06, 2014 4:19 pm
Re: p2y segmentation fault :: yambo 3.4.1 r.3187 + QE 5.1.1
No probems with new yambo 4.0.0 (svn rev. 71).
Dr. Vyacheslav Sokolov
Fiber Optics Research Center, Russian Academy of Sciences
Moscow, Russia
Fiber Optics Research Center, Russian Academy of Sciences
Moscow, Russia
- Davide Sangalli
- Posts: 614
- Joined: Tue May 29, 2012 4:49 pm
- Location: Via Salaria Km 29.3, CP 10, 00016, Monterotondo Stazione, Italy
- Contact:
Re: p2y segmentation fault :: yambo 3.4.1 r.3187 + QE 5.1.1
Dear Vyacheslav Sokolov,
thank you very much for the report.
We'll try to fix the also stable as soon as possible. Meanwhile either use an older version of pwscf or the 4.0.0 yambo version. However be aware that the 4.0.0 is a devel version, thus still unstable. Presently it overcomes all the tests of our test-suite, which however does not mean yet it is a production version.
D.
thank you very much for the report.
We'll try to fix the also stable as soon as possible. Meanwhile either use an older version of pwscf or the 4.0.0 yambo version. However be aware that the 4.0.0 is a devel version, thus still unstable. Presently it overcomes all the tests of our test-suite, which however does not mean yet it is a production version.
D.
Davide Sangalli, PhD
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/
CNR-ISM, Division of Ultrafast Processes in Materials (FLASHit) and MaX Centre
https://sites.google.com/view/davidesangalli
http://www.max-centre.eu/