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How to run Yambo in multiple cores/nodes

Posted: Thu Mar 06, 2014 4:07 am
by caowd
Recently I am doing GW calculations of certain 2D materials and when I try to do parallel calculations by using Yambo, errors came out:

yambo : invalid option -- p

The corresponding submitted script to the PBS system is

#PBS -N dudulu
#PBS -l nodes=1:ppn=12
cd $PBS_O_WORKDIR
cp $PBS_NODEFILE node

/usr/local/mpich-1.2.7p1-ifc/bin/mpirun -np 12 -machinefile node /home/caowd/bin/yambo


This script works well in quantum-espresso, so I wonder why it fails in Yambo?
I am looking forwards to your response.

Re: How to run Yambo in multiple cores/nodes

Posted: Thu Mar 06, 2014 7:48 am
by Daniele Varsano
Dear Wen-Dong Cao,
this looks to be a known problem related to mpich in certain machine. The easy solution is to use mpich2 or openmpi.
You can have a look to this post or this.
Best,
Daniele

Re: How to run Yambo in multiple cores/nodes

Posted: Sun Mar 16, 2014 4:07 am
by caowd
 Thank you Daniele, I have understood my problem and fixed it by installing a new mpi as you suggested