Error using "mpirun " for SHG
Posted: Wed Jul 12, 2023 2:28 pm
Dear Yambo developer and user
i want to calculate the SHG using yambo for 1ML MoSe2. I use a cluster to do such a calculation .
But i have a problem with 'mpirun ' . In fact to use yambo_nl i have load the following module:
module load gcc/8.3.0
module load intel/21.1.1
module load openmpi/4.1.0
module load yambo/5.1.1
compile the calculation give the following error (please see the file attached)
<09m-28s> [DIP] Writing dipoles header
[ERROR] STOP signal received while in[04] Dipoles
[ERROR] Writing File ./SAVE//ndb.dipoles; Variable NOT DEFINED; Permission denied
In the r_setup (please see the file attached) is shown that it is serial calculation, even though i load openmpi/4.1.0 and i run it in parallel
Version 5.1.0 Revision 21422 Hash (prev commit) fde6e2a07
Branch is
Serial+HDF5_IO Build
Note that It compile without any error for 'serial' calculation
The problem is it in the module that i load or in the installation of yambo in the cluster?
Thanks alots.
i want to calculate the SHG using yambo for 1ML MoSe2. I use a cluster to do such a calculation .
But i have a problem with 'mpirun ' . In fact to use yambo_nl i have load the following module:
module load gcc/8.3.0
module load intel/21.1.1
module load openmpi/4.1.0
module load yambo/5.1.1
compile the calculation give the following error (please see the file attached)
<09m-28s> [DIP] Writing dipoles header
[ERROR] STOP signal received while in[04] Dipoles
[ERROR] Writing File ./SAVE//ndb.dipoles; Variable NOT DEFINED; Permission denied
In the r_setup (please see the file attached) is shown that it is serial calculation, even though i load openmpi/4.1.0 and i run it in parallel
Version 5.1.0 Revision 21422 Hash (prev commit) fde6e2a07
Branch is
Serial+HDF5_IO Build
Note that It compile without any error for 'serial' calculation
The problem is it in the module that i load or in the installation of yambo in the cluster?
Thanks alots.