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Slepc compilation error in yambo 5.1

https://www.yambo-code.eu/forum/viewtopic.php?t=2217

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Slepc compilation error in yambo 5.1

Posted: Mon Apr 04, 2022 9:25 am
by sitangshu
Dear all,

While installing Yambo 5.1 from git branch with gcc 7.5.0 & python 3, I got this piece of error:
....
....
....
FC installed-arch-linux2-c-debug-complex/obj/pep/f90-mod/slepcpepmod.o
FC installed-arch-linux2-c-debug-complex/obj/nep/f90-mod/slepcnepmod.o
AR installed-arch-linux2-c-debug-complex/lib/libslepc.a
/usr/bin/ar: @installed-arch-linux2-c-debug-complex/lib/libslepc.a.args: No such file or directory
gmake[8]: *** [installed-arch-linux2-c-debug-complex/lib/libslepc.a] Error 1
gmake[7]: *** [slepc_libs] Error 2
*******************************ERROR************************************
Error during compile, check installed-arch-linux2-c-debug-complex/lib/slepc/conf/make.log
Send all contents of ./installed-arch-linux2-c-debug-complex/lib/slepc/conf to slepc-maint@upv.es
************************************************************************
make[6]: *** [all] Error 1
make[5]: *** [all] Error 2
make[4]: *** [package-ready-stamp] Error 2
make[3]: *** [slepc] Error 2


Regards
Sitangshu

Re: Slepc compilation error in yambo 5.1

Posted: Mon Apr 04, 2022 3:56 pm
by sitangshu
Here is the SlepC Make.log attached.

Re: Slepc compilation error in yambo 5.1

Posted: Mon Apr 04, 2022 4:31 pm
by Nicola Spallanzani
Dear Sitangshu,
could you send also the file config/report from the yambo main directory?

Best,
Nicola

Re: Slepc compilation error in yambo 5.1

Posted: Mon Apr 04, 2022 4:43 pm
by sitangshu
Here it is Nicola.

Thanks
Sitangshu

Re: Slepc compilation error in yambo 5.1

Posted: Mon Apr 04, 2022 5:06 pm
by Nicola Spallanzani
Sorry I mean the file named "report" inside the directory "config".

Nicola

Re: Slepc compilation error in yambo 5.1

Posted: Mon Apr 04, 2022 6:13 pm
by sitangshu
Here it is :)

Sitangshu

Re: Slepc compilation error in yambo 5.1

Posted: Tue Apr 05, 2022 8:47 am
by sdwang
Dear developers,
I met the same problem when installing V5.1 as follows:
...
/usr/bin/ar: @installed-arch-linux2-c-debug-complex/lib/libslepc.a.args: No such file or directory
gmake[6]: *** [installed-arch-linux2-c-debug-complex/lib/libslepc.a] Error 1
gmake[5]: *** [slepc_libs] Error 2
*******************************ERROR************************************
Error during compile, check installed-arch-linux2-c-debug-complex/lib/slepc/conf/make.log
Send all contents of ./installed-arch-linux2-c-debug-complex/lib/slepc/conf to slepc-maint@upv.es
************************************************************************
make[4]: *** [all] Error 1
make[3]: *** [all] Error 2
make[2]: *** [package-ready-stamp] Error 2
make[1]: *** [slepc] Error 2

The intel version is 19.1.0.139 I used performing the installation and it is OK for the previous Yambo version.
Thanks!

Shudong

Re: Slepc compilation error in yambo 5.1

Posted: Wed Apr 06, 2022 11:00 am
by Nicola Spallanzani
Hi,
I'm able to compile without issues in this way using the intel compilers, intelmpi and mkl:

Code: Select all

git clone https://github.com/yambo-code/yambo.git
cd yambo
git clone https://github.com/yambo-code/yambo-libraries.git lib/yambo

export FC=ifort 
export F77=ifort
export CPP="icc -E -ansi"
export CC=icc 
export FPP="fpp -free -P"
export F90SUFFIX=".f90"
export MPIFC=mpiifort
export MPIF77=mpiifort
export MPICC=mpiicc
export MPICXX=mpiicpc

./configure \
    --enable-open-mp --enable-mpi --enable-slepc-linalg --enable-hdf5-par-io \
    --enable-msgs-comps --enable-time-profile --enable-memory-profile \
    --with-blas-libs="-L${MKLROOT}/lib/intel64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl" \
    --with-lapack-libs="-L${MKLROOT}/lib/intel64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl" \
    --with-scalapack-libs="-L${MKLROOT}/lib/intel64 -lmkl_scalapack_lp64" \
    --with-blacs-libs="-L${MKLROOT}/lib/intel64 -lmkl_blacs_intelmpi_lp64" \
    --with-fft-includedir="${MKLROOT}/include" \
    --with-fft-libs="-L${MKLROOT}/lib/intel64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl" \
    --with-extlibs-path=${HOME}/opt/yambo-ext-libs

make -j4 core
So, I suggest to you to start from here and, if it works also for you, then add other configure flags and report here in case of issues.
You can also launch

Code: Select all

make -j4 all
if you need the projects executables, otherwise stay with the core ones.
I use the option "-j4" in the make because I noticed some issues in the compilation of the libraries when asking more then 4 parallel elements in the compilation.

Best,
Nicola

Re: Slepc compilation error in yambo 5.1

Posted: Wed Apr 06, 2022 12:53 pm
by sdwang
Dear Nicola,
I installed the V 5.1 as your suggestion but it failed as:
...
ome/hipeson/yambo/lib/yambo/external//intel/mpiifort/single/include -I/home/hipeson/yambo/lib/yambo/external//intel/mpiifort/v4/parallel/include -I/home/hipeson/yambo/lib/yambo/external//intel/mpiifort/include -I/home/hipeson/intel2020/compilers_and_libraries_2020.0.139/linux/mkl/include -I/home/hipeson/yambo/lib/yambo/driver/include -I/home/hipeson/yambo/include/driver mod_pars.f90 >> /home/hipeson/yambo/log/"compile_"yambo".log" 2>&1)
make[2]: *** [mod_pars.o] Error 1
make[1]: *** [yambo] Error 2
yambo build failed
And in yambo_log the log is:
e -I/home/hipeson/intel2020/compilers_and_libraries_2020.0.139/linux/mkl/include -I/home/hipeson/yambo/lib/yambo/driver/include -I/home/hipeson/yambo/include/driver mod_pars.f90
mod_pars.f90(26): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [NETCDF]
use netcdf
-----^
mod_pars.f90(88): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_FLOAT]
integer, parameter :: nf90_SP = nf90_float
----------------------------------^
mod_pars.f90(88): error #6404: This name does not have a type, and must have an explicit type. [NF90_FLOAT]
integer, parameter :: nf90_SP = nf90_float
----------------------------------^
compilation aborted for mod_pars.f90 (code 1)

I used intel and mkl both in 2019 and 2021 version.

Thanks!

Shudong

Re: Slepc compilation error in yambo 5.1

Posted: Wed Apr 06, 2022 7:26 pm
by sitangshu
Hi Nicola,

1) I incidentally tried to install slepc following this: https://www.youtube.com/watch?v=hqVpaZ-axNk&t=167s
and I could install both petsc and slepc without any problem using openmpi and gcc9. But I did not find any slepc.a lib.

2) I have tried to use the same procedure you mentioned but still getting the libslepc.a error:
/usr/bin/ar: @installed-arch-linux2-c-debug-complex/lib/libslepc.a.args: No such file or directory
gmake[8]: *** [installed-arch-linux2-c-debug-complex/lib/libslepc.a] Error 1
gmake[7]: *** [slepc_libs] Error 2

I have the followings only in our cluster
# FC kind = intel ifort version 18.0.3
# MPI kind= Intel(R) MPI Library 2018 Update 3 for Linux* OS

I am also attaching the report file with intelFC, in case you want to see....

Regards,
Sitangshu
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