Yambo Community Forum

Dear all:

I tried to compile yambo-4.1.3 in parallel on my CentOs6 with the following configuration script,

./configure --prefix=/home/tsli/mpi_yambo/
--with-hdf5-path=/home/tsli/mpi_yambo/
--enable-netcdf-LFS --enable-netcdf-hdf5
--with-iotk-path=/home/tsli/usr/espresso-4.3.2/iotk/ --enable-iotk
--with-netcdf-libs="-L/home/tsli/mpi_yambo/lib/ -lnetcdf"
FC=ifort F77=ifort PFC=/opt/intel/openmpi-1.8.4/bin/mpifort CC=icc
--enable-open-mp
--with-mpi-libs=/opt/intel/openmpi-1.8.4/lib

but the following error occurred:

>>>[Making external_c]<<<
cp: `/home/tsli/soft/yambo-4.1.3/src/external_c/.objects' and `src/external_c/.objects' are the same file
Warning #2216: '=' assumed following macro name "_libexternal_c" in command-line definition

make[2]: Entering directory `/home/tsli/soft/yambo-4.1.3/src/external_c'
ar: creating libexternal_c.a
make[2]: Leaving directory `/home/tsli/soft/yambo-4.1.3/src/external_c'

>>>[Making modules]<<<
cp: `/home/tsli/soft/yambo-4.1.3/src/modules/.objects' and `src/modules/.objects' are the same file
Warning #2216: '=' assumed following macro name "_libmodules" in command-line definition

make[2]: Entering directory `/home/tsli/soft/yambo-4.1.3/src/modules'
mod_pars.f90(26): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [NETCDF]
use netcdf
-----^
mod_pars.f90(48): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant. [NF90_REAL]
integer, parameter :: nf90_SP = nf90_real
---------------------------------^
mod_pars.f90(48): error #6404: This name does not have a type, and must have an explicit type. [NF90_REAL]
integer, parameter :: nf90_SP = nf90_real
---------------------------------^
compilation aborted for mod_pars.f90 (code 1)
make[2]: *** [mod_pars.o] Error 1
make[2]: Leaving directory `/home/tsli/soft/yambo-4.1.3/src/modules'
make[1]: *** [ypp_ph] Error 2
make[1]: Leaving directory `/home/tsli/soft/yambo-4.1.3'
make: *** [all] Error 2

with the following configuration results:
#
# [VER] 4.1.3 r.14036
#
# - GENERAL CONFIGURATIONS -
#
# [SYS] linux@x86_64
# [SRC] /home/tsli/soft/yambo-4.1.3
# [BIN] /home/tsli/soft/yambo-4.1.3/bin
# [-] Double precision
# [X] Redundant compilation
# [-] Run-Time timing profile
#
# - PARALLEL SUPPORT -
#
# [-] MPI
# [X] OpenMP
# [-] Blue-Gene specific procedures
#
# - LIBRARIES (E=external library; I=internal library; -=not used;) -
#
# I/O
# [ E ] IOTK : /home/tsli/usr/espresso-4.3.2/iotk//src/libiotk.a (QE 5.0)
# [ - ] ETSF_IO:
# [ E ] NETCDF : -L/home/tsli/mpi_yambo/lib/ -lnetcdf (With large files support)
# [ - ] HDF5 :
#
# MATH
# [ I ] FFT : Internal Goedecker FFT with 0 cache
# [ I ] BLAS : -lblas
# [ I ] LAPACK : -llapack
# [ - ] SCALAPACK:
#
# OTHER
# [ I ] LibXC : -lxcf90 -lxc
# [ E ] MPI library:
#
# - COMPILERS, MAKE and EDITOR -
#
# [ CPP ] icc -E -I/home/tsli/mpi_yambo/include/ -D_64BIT_OFFSET -D_FFTSG -D_OPENMP
# [ FPP ] cpp -E -P -ansi -D_64BIT_OFFSET -D_FFTSG -D_OPENMP
# [ C ] mpicc -g -O2 -D_C_US -D_FORTRAN_US
# [MPICC]
# [ F90 ] ifort -assume bscc -g -O3 -ip -openmp
# [MPIF ] -openmp
# [ F77 ] ifort -assume bscc -g -O3 -ip
# [Cmain] -nofor_main
# [NoOpt] -assume bscc -g -O0
#
# [ MAKE ] make
# [EDITOR] vim
#

I don't know how to solve this problem and I hope you can give me some suggestions, thank you. The config.log is attached.

Best regards
Tianshu Li
Jilin University

Dear Thiansu,
Sorry for the delay in replying,
have you succeed to compile or still you have problem?
In any case I suggest you to switch to the latest yambo version as many bugs have been fixed.
Best,

Daniele