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Installing yambo
Posted: Mon Apr 03, 2017 11:14 am
by aalbrak
Dear sir
I hope you have a good time,
I tried to install yambo in my personal computer (imac, Intel core i7, 32 GB, osx10.8.5, ). please see the attached file.
Best wishes
Umm Al-Qura University
Saudi Arabia
Re: Installing yambo
Posted: Mon Apr 03, 2017 11:42 am
by Daniele Varsano
Dear Aalbrak,
it seems that Netcdf library are compiled with a different compiler you are compiling yambo:
Code: Select all
ifort: command line warning #10159: invalid argument for option '-mtune'
mod_pars.f90(28): error #7013: This module file was not generated by any
release of this compiler. [NETCDF]
I can see that you are using both gfortran and ifort.
In order to solve your problem, you can have a look to this thread:
viewtopic.php?f=1&t=1200&p=5665&hilit=n ... real#p5665
Hopefully, you can solve the problem simply specifying the compiler in the configure.
./configure FC=ifort (o gfortran)
I suggest you check to which compiler points your mpif90
Best,
Daniele
Re: Installing yambo
Posted: Mon Apr 03, 2017 6:47 pm
by aalbrak
Dear Daniele,
Thank you very much for your responding,
I try the following steps:
-make clean_all
-./configure FC=ifort
-make all
still there are problems. the result is attached .
Best wishes,
Umm Al-Qura University
Saudi Arabia
Re: Installing yambo
Posted: Tue Apr 04, 2017 8:46 am
by Daniele Varsano
Dear Aalbrak,
I do not know if this is the problem but you are mixing intel fortran compiler and C gnu compiler.
Moreover you are compiling yambo_kerr, yambo_ph...etc, instead of yambo.
My suggestion is to define also the C compilers:
make distclean,
./configure FC=ifort, CC=icc, CPP="icc -E"
make yambo interfaces ypp
Alternatively, you can use the gnu fortran compiler:
./configure F90=gfortran CPP=cpp CC=gcc
or
./configure F90=gfortran CPP="gcc -E" CC=gcc
Best,
Daniele
Re: Installing yambo
Posted: Tue Apr 04, 2017 5:22 pm
by aalbrak
Dear Daniele,
Thank you very much,
I tried the three suggestions and still there are problems. The attached files are the screen copies and config.log of three tries (I named try11,12,13).
Because of limitation, only three files are attached. The other three files will be next
Best wishes
Re: Installing yambo
Posted: Tue Apr 04, 2017 5:26 pm
by aalbrak
Dear Daniele,
The other three files are attached.
Thank you in advance
Umm Al-Qura University
Saudi Arabia
Re: Installing yambo
Posted: Wed Apr 05, 2017 10:16 am
by Daniele Varsano
Dear Aalbrak,
from the first attempt it looks that you do not have the icc compiler, so you need to resort to gnu compiler.
The second and third attempts have been done without doing a make distclean, so you have conflict arising from the xclibrary, so try again after a make distclean.
When defining the cpp do not forget to put it between quotation: CPP="gcc -E"
Daniele
Re: Installing yambo
Posted: Wed Apr 05, 2017 12:38 pm
by aalbrak
Dear Daniele,
Thank you,
I have done what you point to as shown below
-make distclean
-./configure F90=gfortran CPP="gcc -E" CC=gcc
-make yambo interfaces ypp
The results are in two attached files (screen copy, config.log)
Best wishes
aalbrak
Umm Al-Qura University
Saudi Arabia
Re: Installing yambo
Posted: Wed Apr 05, 2017 2:17 pm
by Daniele Varsano
Hello,
again with:
Code: Select all
ifort: command line warning #10159: invalid argument for option '-mtune'
mod_pars.f90(28): error #7013: This module file was not generated by any
release of this compiler. [NETCDF]
use netcdf
I cannot understand why it is calling ifort.
What is the outcome of
> mpif90 --version
and
>mpicc --version
May some other can help you on this,
Best,
Daniele
Re: Installing yambo
Posted: Wed Apr 05, 2017 5:38 pm
by Davide Sangalli
Dear Aalbrak,
can you also post the result of "mpif90 -show"
Best,
D.