Re: GW calculation using 5.0 fails with segmentation fault (signal 11)
Posted: Tue Jan 12, 2021 2:05 pm
Dear Sir,
Thanks a lot for helping me to solve the segmentation fault issue. By following your suggestions for the configurations options, I remove all the linking to other linear algebra libraries as
--with-blas-libs --with-lapack-libs after adding --enable-int-linalg (internal linear algebra). It compiles the code without any problem.
I did a test calculation using GW approaximation on hBN and got no error like segmentation fault that I was getting earlier. Now, I proceed further to see the qp band interpolation using ypp. I followed following procedure,
i) ypp -s b
ii) ypp -y # to remove TR symmetry, this produces the input
fixsyms # [R] Remove symmetries not consistent with an external perturbation
% Efield1
0.000000 | 0.000000 | 0.000000 | # First external Electric Field
%
% Efield2
0.000000 | 0.000000 | 0.000000 | # Additional external Electric Field
%
BField= 0.000000 T # [MAG] Magnetic field modulus
Bpsi= 0.000000 deg # [MAG] Magnetic field psi angle [degree]
Btheta= 0.000000 deg # [MAG] Magnetic field theta angle [degree]
#RmAllSymm # Remove all symmetries
RmTimeRev # Remove Time Reversal
#RmSpaceInv # Remove Spatial Inversion
When I run ypp after that FIxSymm folder is created. However, the SAVE folder is empty. following output for ypp.
<---> [01] MPI/OPENMP structure, Files & I/O Directories
<---> [02] Y(ambo) P(ost)/(re) P(rocessor)
<---> [03] Core DB
<---> :: Electrons :: 16.00000
<---> :: Temperature [ev]:: 0.000000
<---> :: Lattice factors [a.u.]:: 4.71774 4.08568 12.29080
<---> :: K points :: 50
<---> :: Bands :: 100
<---> :: Symmetries :: 12
<---> :: RL vectors :: 8101
<---> [04] K-point grid
<---> :: Q-points (IBZ):: 50
<---> :: X K-points (IBZ):: 50
<---> [05] CORE Variables Setup
<---> [05.01] Unit cells
<---> [05.02] Symmetries
<---> [05.03] Reciprocal space
<---> [05.04] K-grid lattice
<---> Grid dimensions : 10 10 4
<---> [05.05] Energies & Occupations
<---> Symmetries-respecting SAVE written to./FixSymm
<---> BZ -> IBZ reduction |########################################| [100%] --(E) --(X)
<---> Symmetries did not change. Program terminaned.
<---> [06] Timing Overview
<---> [07] Game Over & Game summary
The output says "Symmetries did not change. Program terminated", although, I remove TR symmetry (in ypp.in). In the earlier version (yambo-4.4.0) post processing using ypp was fine. I don't know what went wrong. Any help will be appreciated.
Regards,
Thanks a lot for helping me to solve the segmentation fault issue. By following your suggestions for the configurations options, I remove all the linking to other linear algebra libraries as
--with-blas-libs --with-lapack-libs after adding --enable-int-linalg (internal linear algebra). It compiles the code without any problem.
I did a test calculation using GW approaximation on hBN and got no error like segmentation fault that I was getting earlier. Now, I proceed further to see the qp band interpolation using ypp. I followed following procedure,
i) ypp -s b
ii) ypp -y # to remove TR symmetry, this produces the input
fixsyms # [R] Remove symmetries not consistent with an external perturbation
% Efield1
0.000000 | 0.000000 | 0.000000 | # First external Electric Field
%
% Efield2
0.000000 | 0.000000 | 0.000000 | # Additional external Electric Field
%
BField= 0.000000 T # [MAG] Magnetic field modulus
Bpsi= 0.000000 deg # [MAG] Magnetic field psi angle [degree]
Btheta= 0.000000 deg # [MAG] Magnetic field theta angle [degree]
#RmAllSymm # Remove all symmetries
RmTimeRev # Remove Time Reversal
#RmSpaceInv # Remove Spatial Inversion
When I run ypp after that FIxSymm folder is created. However, the SAVE folder is empty. following output for ypp.
<---> [01] MPI/OPENMP structure, Files & I/O Directories
<---> [02] Y(ambo) P(ost)/(re) P(rocessor)
<---> [03] Core DB
<---> :: Electrons :: 16.00000
<---> :: Temperature [ev]:: 0.000000
<---> :: Lattice factors [a.u.]:: 4.71774 4.08568 12.29080
<---> :: K points :: 50
<---> :: Bands :: 100
<---> :: Symmetries :: 12
<---> :: RL vectors :: 8101
<---> [04] K-point grid
<---> :: Q-points (IBZ):: 50
<---> :: X K-points (IBZ):: 50
<---> [05] CORE Variables Setup
<---> [05.01] Unit cells
<---> [05.02] Symmetries
<---> [05.03] Reciprocal space
<---> [05.04] K-grid lattice
<---> Grid dimensions : 10 10 4
<---> [05.05] Energies & Occupations
<---> Symmetries-respecting SAVE written to./FixSymm
<---> BZ -> IBZ reduction |########################################| [100%] --(E) --(X)
<---> Symmetries did not change. Program terminaned.
<---> [06] Timing Overview
<---> [07] Game Over & Game summary
The output says "Symmetries did not change. Program terminated", although, I remove TR symmetry (in ypp.in). In the earlier version (yambo-4.4.0) post processing using ypp was fine. I don't know what went wrong. Any help will be appreciated.
Regards,