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Re: em1s too time consuming

Posted: Tue Dec 01, 2015 3:07 pm
by Stephan
Hi Daniele,
thanks for the reply. In the attachment you can find the results of the command ls -ltr ./SAVE

Thanks and Regards
Stephan

Re: em1s too time consuming

Posted: Tue Dec 01, 2015 3:12 pm
by Daniele Varsano
Dear Stephan,
it looks the screening ndb.em1s is not present in your SAVE directory.
Have you moved it somewhere, or you used the -J redirection command in the em1s run?
Quite strange as in the previous report it was read.

Best,

Daniele

Re: em1s too time consuming

Posted: Tue Dec 01, 2015 4:36 pm
by Stephan
Sorry these were the wrong data. This should be the correct one.
The amount of data is far too high to upload. Thats why I had to split it up in 14 files a 1MB.
Three of these files are packed together.

Thanks and regards

Stephan

Re: em1s too time consuming

Posted: Tue Dec 01, 2015 4:37 pm
by Stephan
and the missing one ...

Re: em1s too time consuming

Posted: Tue Dec 01, 2015 4:51 pm
by Daniele Varsano
Dear Stephan
ok, first of all let me give you an *important* advice. You have a too much fragmented BS kernel and this can gives you huge problem to your file system.
We still have to organize this part in order to avoid that. In the meanwhile I strongly suggest you to insert in your input file this variable:

Code: Select all

DBsIOoff= "BS" 
In this way you will not write the BSE. If you really need it to be stored you can use:

Code: Select all

DBsFRAGpm= "-K -BS" 
Please note the "-" sign.

Next: it looks you have all the needed file, and looks also that you succeed to run a BSE calculation the first time, next something odd has happened.

I suggest you to remove all the previous BS file: ./SAVE/ndb.BS_Q1_CPU_*
next build up an input file by also adding the "-b" option. This should read the ndb.em1s file you previously calculated. In any case check that the
variable (bands in X, Gblk etc.) you find in the input are the *same* of the em1s run you did before. And run again the BS.
Yambo should skip the em1s calculation, read the ndb,em1s files and start to build the BSE kernel.
If it does not work send again the report and standard outputs and we will try to understand what is happening.
Best,
Daniele

Re: em1s too time consuming

Posted: Wed Dec 02, 2015 5:39 pm
by Stephan
Thank you very much I try what you suggested

Re: em1s too time consuming

Posted: Thu Dec 10, 2015 2:38 pm
by Stephan
Hello Daniele,
I tried what you suggested and modified the input file.
Again the calculation did not come to an end after three days with 16 procs (maximum capacity I can use).
Can you help me to come to a result?

Thanks and Regards

Stephan

Re: em1s too time consuming

Posted: Thu Dec 10, 2015 2:40 pm
by Stephan
Here are the remaining log-files and the input-file

Best regards

Re: em1s too time consuming

Posted: Fri Dec 11, 2015 10:08 am
by Daniele Varsano
Dear Stephan,
I can see that now the screening is correclty read.
What I suggest you to do is:
1) remove any ndb.BS* file in your SAVE directory if any
2) remove DBsIOoff= "BS" form input and add
DBsFRAGpm= "-K -BS"
in this way you can try to do a restart.
3) Use the parallelization over k points:
BS_CPU= "16 1 1"

Best,
Daniele

Re: em1s too time consuming

Posted: Fri Dec 11, 2015 3:14 pm
by Stephan
Thank you very much. Let's see if it will work..